HL_8WHY_071

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAGACCAC

Length

9 nucleotides

Bulged bases

8WHY|1|A|C|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_071 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1101

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8WHY|1|A|G|3040
8WHY|1|A|C|3041
8WHY|1|A|A|3042
8WHY|1|A|G|3043
8WHY|1|A|A|3044
8WHY|1|A|C|3045
8WHY|1|A|C|3046
8WHY|1|A|A|3047
8WHY|1|A|C|3048

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17