HL_8WI7_029

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

8WI7|1|A|U|1075, 8WI7|1|A|G|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WI7_029 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.2486

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8WI7|1|A|G|1072
8WI7|1|A|G|1073
8WI7|1|A|A|1074
8WI7|1|A|U|1075
8WI7|1|A|A|1076
8WI7|1|A|A|1077
8WI7|1|A|G|1078
8WI7|1|A|C|1079

Current chains

Chain A

23S rRNA

Nearby chains