HL_8WI7_056

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8WI7|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WI7_056 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.2368

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8WI7|1|A|C|2472
8WI7|1|A|U|2473
8WI7|1|A|G|2474
8WI7|1|A|G|2475
8WI7|1|A|G|2476
8WI7|1|A|G|2477
8WI7|1|A|C|2478
8WI7|1|A|G|2479
8WI7|1|A|G|2480

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27