HL_8WI9_021
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 8WI9|1|a|G|953
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8WI9_021 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.1264
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8WI9|1|a|G|945
8WI9|1|a|A|946
8WI9|1|a|U|947
8WI9|1|a|G|948
8WI9|1|a|C|949
8WI9|1|a|A|950
8WI9|1|a|A|951
8WI9|1|a|C|952
8WI9|1|a|G|953
8WI9|1|a|C|954
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14A
- Chain w
- Ribosome hibernation promotion factor RafH
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