HL_8WIB_013

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8WIB|1|A|G|411, 8WIB|1|A|A|412, 8WIB|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIB_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0944

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8WIB|1|A|G|409
8WIB|1|A|U|410
8WIB|1|A|G|411
8WIB|1|A|A|412
8WIB|1|A|G|413
8WIB|1|A|A|414
8WIB|1|A|G|415
8WIB|1|A|C|416
8WIB|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain X

50S ribosomal protein L24