HL_8WIC_004

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2029

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8WIC|1|A|A|134
8WIC|1|A|G|135
8WIC|1|A|U|136
8WIC|1|A|G|137
8WIC|1|A|A|138
8WIC|1|A|U|139
8WIC|1|A|G|140
8WIC|1|A|U|141

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L29

Chain W

50S ribosomal protein L23