3D structure

PDB id
8WIC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GUAAAGAUGC
Length
10 nucleotides
Bulged bases
8WIC|1|A|A|2254, 8WIC|1|A|A|2255, 8WIC|1|A|G|2256
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8WIC_053 not in the Motif Atlas
Homologous match to HL_7RQB_050
Geometric discrepancy: 0.1373
The information below is about HL_7RQB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_90642.6
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
6

Unit IDs

8WIC|1|A|G|2251
8WIC|1|A|U|2252
8WIC|1|A|A|2253
8WIC|1|A|A|2254
8WIC|1|A|A|2255
8WIC|1|A|G|2256
8WIC|1|A|A|2257
8WIC|1|A|U|2258
8WIC|1|A|G|2259
8WIC|1|A|C|2260

Current chains

Chain A
23S rRNA

Nearby chains

Chain 5
50S ribosomal protein L32
Chain F
50S ribosomal protein L3
Chain U
50S ribosomal protein L21

Coloring options:


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