HL_8WIC_057

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8WIC|1|A|A|2492, 8WIC|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0971

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8WIC|1|A|C|2488
8WIC|1|A|U|2489
8WIC|1|A|A|2490
8WIC|1|A|A|2491
8WIC|1|A|A|2492
8WIC|1|A|A|2493
8WIC|1|A|U|2494
8WIC|1|A|G|2495
8WIC|1|A|U|2496
8WIC|1|A|A|2497
8WIC|1|A|A|2498
8WIC|1|A|C|2499
8WIC|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27