HL_8WIC_062

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

8WIC|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_062 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0682

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8WIC|1|A|U|2628
8WIC|1|A|G|2629
8WIC|1|A|A|2630
8WIC|1|A|G|2631
8WIC|1|A|U|2632
8WIC|1|A|G|2633
8WIC|1|A|G|2634
8WIC|1|A|A|2635
8WIC|1|A|A|2636
8WIC|1|A|G|2637

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15