HL_8WIC_079

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACGGCAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_079 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.1485

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8WIC|1|A|G|2528
8WIC|1|A|A|2529
8WIC|1|A|C|2530
8WIC|1|A|G|2531
8WIC|1|A|G|2532
8WIC|1|A|C|2533
8WIC|1|A|A|2534
8WIC|1|A|A|2535
8WIC|1|A|U|2536

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L5