3D structure

PDB id
8WID (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GAUGCAACGC
Length
10 nucleotides
Bulged bases
8WID|1|a|G|953
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8WID_021 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.1117
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8WID|1|a|G|945
8WID|1|a|A|946
8WID|1|a|U|947
8WID|1|a|G|948
8WID|1|a|C|949
8WID|1|a|A|950
8WID|1|a|A|951
8WID|1|a|C|952
8WID|1|a|G|953
8WID|1|a|C|954

Current chains

Chain a
16S rRNA

Nearby chains

Chain j
30S ribosomal protein S9
Chain k
30S ribosomal protein S10
Chain n
30S ribosomal protein S13
Chain w
Ribosome hibernation promotion factor RafH

Coloring options:


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