HL_8WIF_006

3D structure

PDB id

8WIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGAUGGC

Length

9 nucleotides

Bulged bases

8WIF|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIF_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0985

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8WIF|1|a|G|259
8WIF|1|a|G|260
8WIF|1|a|U|261
8WIF|1|a|G|262
8WIF|1|a|A|263
8WIF|1|a|U|264
8WIF|1|a|G|265
8WIF|1|a|G|266
8WIF|1|a|C|267

Current chains

Chain a

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S17

Chain u

30S ribosomal protein S20