HL_8WIF_025

3D structure

PDB id

8WIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8WIF|1|a|G|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIF_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0981

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8WIF|1|a|G|1069
8WIF|1|a|U|1070
8WIF|1|a|U|1071
8WIF|1|a|A|1072
8WIF|1|a|A|1073
8WIF|1|a|G|1074
8WIF|1|a|U|1075
8WIF|1|a|C|1076

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain h

30S ribosomal protein S7