HL_8WV1_017

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

8WV1|1|A|C|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_017 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.2074

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8WV1|1|A|C|666
8WV1|1|A|G|667
8WV1|1|A|A|668
8WV1|1|A|A|669
8WV1|1|A|C|670
8WV1|1|A|A|671
8WV1|1|A|G|672

Current chains

Chain A

23S rRNA

Nearby chains

Chain 13

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain K

50S ribosomal protein L15