8WV1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8WV1_001 | 1/A/58:67 | No text annotation | homologous HL_9DFE_001 HL_17803.1 | |
| HL_8WV1_002 | 1/A/86:95 | No text annotation | homologous HL_9DFE_002 HL_00911.2 | |
| HL_8WV1_003 | 1/A/121:126 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_8WV1_004 | 1/A/136:141 | No text annotation | homologous HL_9DFE_004 HL_71391.1 | |
| HL_8WV1_005 | 1/A/183:190 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_8WV1_131 | 1/A/235:241 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_8WV1_007 | 1/A/269:275 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_8WV1_008 | 1/A/329:336 | T-loop with 1 bulged base | homologous HL_9DFE_009 HL_13999.2 | |
| HL_8WV1_009 | 1/A/351:359 | T-loop with unstacked turn | homologous HL_9DFE_011 HL_27670.3 | |
| HL_8WV1_132 | 1/A/410:418 | No text annotation | ||
| HL_8WV1_011 | 1/A/437:444 | No text annotation | homologous HL_9DFE_013 HL_30680.5 | |
| HL_8WV1_012 | 1/A/488:493 | GNRA | homologous HL_9DFE_014 HL_34789.2 | |
| HL_8WV1_013 | 1/A/513:518 | GNRA | homologous HL_9DFE_015 HL_34789.2 | |
| HL_8WV1_014 | 1/A/589:598 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_016 HL_33597.2 | |
| HL_8WV1_015 | 1/A/635:641 | No text annotation | homologous HL_9DFE_017 HL_99456.1 | |
| HL_8WV1_016 | 1/A/654:659 | GNRA | homologous HL_5J7L_152 NA | |
| HL_8WV1_017 | 1/A/666:672 | GNRA | homologous HL_9DFE_019 HL_34789.2 | |
| HL_8WV1_018 | 1/A/759:766 | GNRA wlth tandem sheared | homologous HL_9DFE_020 HL_87306.1 | |
| HL_8WV1_019 | 1/A/791:800 | No text annotation | homologous HL_9DFE_021 HL_50204.1 | |
| HL_8WV1_020 | 1/A/826:832 | No text annotation | homologous HL_9DFE_022 HL_92935.1 | |
| HL_8WV1_133 | 1/A/873:878 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_8WV1_134 | 1/A/931:938 | No text annotation | homologous HL_9DFE_024 HL_67772.1 | |
| HL_8WV1_023 | 1/A/1000:1007 | GNRA | homologous HL_9DFE_025 HL_34789.2 | |
| HL_8WV1_024 | 1/A/1024:1031 | No text annotation | homologous HL_9DFE_026 HL_47171.1 | |
| HL_8WV1_025 | 1/A/1110:1120 | No text annotation | homologous HL_9DFE_027 NA | |
| HL_8WV1_026 | 1/A/1138:1145 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.2 | |
| HL_8WV1_027 | 1/A/1217:1223 | No text annotation | homologous HL_9DFE_029 NA | |
| HL_8WV1_028 | 1/A/1268:1273 | GNRA | homologous HL_9DFE_030 HL_34789.2 | |
| HL_8WV1_029 | 1/A/1327:1335 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_031 HL_33597.2 | |
| HL_8WV1_030 | 1/A/1370:1376 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_8WV1_031 | 1/A/1409:1414 | GNRA | homologous HL_9DFE_033 HL_34789.2 | |
| HL_8WV1_032 | 1/A/1435:1444 | No text annotation | homologous HL_9DFE_034 HL_77449.1 | |
| HL_8WV1_033 | 1/A/1499:1506 | No text annotation | homologous HL_9DFE_035 HL_00557.1 | |
| HL_8WV1_034 | 1/A/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_036 HL_49081.1 | |
| HL_8WV1_035 | 1/A/1612:1615 | Mini UNCG | homologous HL_9DFE_037 HL_90436.2 | |
| HL_8WV1_036 | 1/A/1658:1665 | No text annotation | homologous HL_9DFE_038 HL_28592.1 | |
| HL_8WV1_037 | 1/A/1677:1682 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_039 HL_49081.1 | |
| HL_8WV1_038 | 1/A/1738:1743 | UNCG | homologous HL_5J7L_175 NA | |
| HL_8WV1_039 | 1/A/1765:1771 | GNRA | homologous HL_9DFE_041 HL_34789.2 | |
| HL_8WV1_040 | 1/A/1783:1787 | No text annotation | homologous HL_4WF9_042 HL_80709.5 | |
| HL_8WV1_041 | 1/A/1808:1818 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_8WV1_042 | 1/A/1837:1842 | GNRA | homologous HL_9DFE_044 HL_34789.2 | |
| HL_8WV1_043 | 1/A/1895:1900 | GNRA | homologous HL_9DFE_045 HL_34789.2 | |
| HL_8WV1_135 | 1/A/1932:1942 | No text annotation | homologous HL_9DFE_046 HL_82185.1 | |
| HL_8WV1_045 | 1/A/1968:1982 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_8WV1_136 | 1/A/2049:2058 | No text annotation | homologous HL_9DFE_048 HL_78372.1 | |
| HL_8WV1_047 | 1/A/2165:2170 | No text annotation | homologous HL_9DFE_049 NA | |
| HL_8WV1_048 | 1/A/2226:2231 | No text annotation | homologous HL_9DFE_050 HL_32346.6 | |
| HL_8WV1_137 | 1/A/2275:2289 | No text annotation | ||
| HL_8WV1_050 | 1/A/2315:2325 | No text annotation | homologous HL_9DFE_053 NA | |
| HL_8WV1_051 | 1/A/2336:2343 | Pseudoknot geometry | homologous HL_9DFE_054 HL_52651.2 | |
| HL_8WV1_052 | 1/A/2367:2374 | GNRA with extra cWW | homologous HL_9DFE_055 HL_87268.1 | |
| HL_8WV1_053 | 1/A/2386:2391 | GNRA | homologous HL_9DFE_056 HL_34789.2 | |
| HL_8WV1_054 | 1/A/2416:2425 | No text annotation | homologous HL_9DFE_057 HL_51853.2 | |
| HL_8WV1_055 | 1/A/2478:2496 | No text annotation | ||
| HL_8WV1_056 | 1/A/2540:2547 | GNRA variation | homologous HL_9DFE_059 HL_46665.2 | |
| HL_8WV1_057 | 1/A/2562:2570 | No text annotation | ||
| HL_8WV1_058 | 1/A/2606:2611 | GNRA | homologous HL_4WF9_059 HL_34789.2 | |
| HL_8WV1_059 | 1/A/2670:2675 | GNRA | homologous HL_9DFE_062 HL_34789.2 | |
| HL_8WV1_138 | 1/A/2713:2718 | Other HL | homologous HL_9DFE_063 HL_64036.2 | |
| HL_8WV1_061 | 1/A/2758:2772 | No text annotation | homologous HL_4WF9_062 HL_53269.2 | |
| HL_8WV1_139 | 1/A/2829:2837 | No text annotation | homologous HL_9DFE_065 HL_37889.1 | |
| HL_8WV1_063 | 1/A/2866:2871 | GNRA | homologous HL_4WF9_065 HL_34789.2 | |
| HL_8WV1_064 | 1/B/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.2 | |
| HL_8WV1_065 | 1/B/86:91 | GNRA | homologous HL_9DFE_069 HL_34789.2 | |
| HL_8WV1_066 | 1/a/58:67 | No text annotation | homologous HL_9DFE_001 HL_17803.1 | |
| HL_8WV1_067 | 1/a/86:94 | No text annotation | homologous HL_9DFE_002 HL_00911.2 | |
| HL_8WV1_068 | 1/a/121:126 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_8WV1_140 | 1/a/136:141 | No text annotation | homologous HL_9DFE_004 HL_71391.1 | |
| HL_8WV1_070 | 1/a/183:190 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_8WV1_071 | 1/a/214:219 | No text annotation | homologous HL_9DFE_006 HL_51020.2 | |
| HL_8WV1_072 | 1/a/234:242 | No text annotation | ||
| HL_8WV1_073 | 1/a/269:275 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_8WV1_074 | 1/a/329:336 | T-loop with 1 bulged base | homologous HL_9DFE_009 HL_13999.2 | |
| HL_8WV1_075 | 1/a/351:359 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.3 | |
| HL_8WV1_141 | 1/a/409:419 | No text annotation | homologous HL_9DFE_012 HL_91503.8 | |
| HL_8WV1_077 | 1/a/437:444 | No text annotation | homologous HL_9DFE_013 HL_30680.5 | |
| HL_8WV1_078 | 1/a/488:493 | GNRA | homologous HL_9DFE_014 HL_34789.2 | |
| HL_8WV1_142 | 1/a/513:518 | GNRA | homologous HL_7A0S_016 HL_34789.2 | |
| HL_8WV1_080 | 1/a/589:598 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_016 HL_33597.2 | |
| HL_8WV1_081 | 1/a/635:641 | No text annotation | homologous HL_9DFE_017 HL_99456.1 | |
| HL_8WV1_082 | 1/a/654:659 | GNRA | homologous HL_5J7L_152 NA | |
| HL_8WV1_143 | 1/a/666:672 | GNRA | homologous HL_9DFE_019 HL_34789.2 | |
| HL_8WV1_084 | 1/a/759:766 | GNRA wlth tandem sheared | homologous HL_9DFE_020 HL_87306.1 | |
| HL_8WV1_085 | 1/a/791:800 | No text annotation | homologous HL_9DFE_021 HL_50204.1 | |
| HL_8WV1_086 | 1/a/826:832 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_8WV1_087 | 1/a/873:878 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_8WV1_144 | 1/a/931:938 | No text annotation | homologous HL_9DFE_024 HL_67772.1 | |
| HL_8WV1_089 | 1/a/1000:1007 | GNRA | homologous HL_9DFE_025 HL_34789.2 | |
| HL_8WV1_090 | 1/a/1024:1031 | No text annotation | homologous HL_9DFE_026 HL_47171.1 | |
| HL_8WV1_091 | 1/a/1110:1120 | No text annotation | homologous HL_9DFE_027 NA | |
| HL_8WV1_092 | 1/a/1138:1145 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.2 | |
| HL_8WV1_093 | 1/a/1217:1223 | No text annotation | homologous HL_9DFE_029 NA | |
| HL_8WV1_094 | 1/a/1268:1273 | GNRA | homologous HL_9DFE_030 HL_34789.2 | |
| HL_8WV1_095 | 1/a/1327:1335 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.2 | |
| HL_8WV1_096 | 1/a/1370:1376 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_8WV1_097 | 1/a/1409:1414 | GNRA | homologous HL_9DFE_033 HL_34789.2 | |
| HL_8WV1_098 | 1/a/1435:1444 | No text annotation | homologous HL_9DFE_034 HL_77449.1 | |
| HL_8WV1_099 | 1/a/1499:1506 | No text annotation | homologous HL_9DFE_035 HL_00557.1 | |
| HL_8WV1_100 | 1/a/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_036 HL_49081.1 | |
| HL_8WV1_101 | 1/a/1612:1615 | Mini UNCG | homologous HL_7A0S_039 HL_90436.2 | |
| HL_8WV1_102 | 1/a/1658:1665 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_8WV1_103 | 1/a/1677:1682 | Pseudoknot geometry with 3' bulge | homologous HL_9DFE_039 HL_49081.1 | |
| HL_8WV1_104 | 1/a/1738:1743 | UNCG | homologous HL_9DFE_040 HL_61337.2 | |
| HL_8WV1_105 | 1/a/1765:1771 | GNRA | homologous HL_9DFE_041 HL_34789.2 | |
| HL_8WV1_106 | 1/a/1783:1787 | No text annotation | homologous HL_4WF9_042 HL_80709.5 | |
| HL_8WV1_107 | 1/a/1808:1818 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_8WV1_108 | 1/a/1837:1842 | GNRA | homologous HL_9DFE_044 HL_34789.2 | |
| HL_8WV1_109 | 1/a/1895:1900 | GNRA | homologous HL_9DFE_045 HL_34789.2 | |
| HL_8WV1_145 | 1/a/1932:1942 | No text annotation | homologous HL_9DFE_046 HL_82185.1 | |
| HL_8WV1_110 | 1/a/1971:1979 | No text annotation | homologous HL_7A0S_048 HL_61418.2 | |
| HL_8WV1_146 | 1/a/2049:2058 | No text annotation | homologous HL_9DFE_048 HL_78372.1 | |
| HL_8WV1_112 | 1/a/2165:2170 | No text annotation | homologous HL_9DFE_049 NA | |
| HL_8WV1_113 | 1/a/2226:2231 | No text annotation | homologous HL_9DFE_050 HL_32346.6 | |
| HL_8WV1_147 | 1/a/2276:2288 | No text annotation | homologous HL_9DFE_052 HL_02042.1 | |
| HL_8WV1_115 | 1/a/2316:2324 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_8WV1_116 | 1/a/2336:2343 | Pseudoknot geometry | homologous HL_9DFE_054 HL_52651.2 | |
| HL_8WV1_117 | 1/a/2367:2374 | GNRA with extra cWW | homologous HL_9DFE_055 HL_87268.1 | |
| HL_8WV1_118 | 1/a/2386:2391 | GNRA | homologous HL_9DFE_056 HL_34789.2 | |
| HL_8WV1_119 | 1/a/2416:2425 | No text annotation | homologous HL_9DFE_057 HL_51853.2 | |
| HL_8WV1_148 | 1/a/2483:2491 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_8WV1_121 | 1/a/2540:2547 | GNRA variation | homologous HL_9DFE_059 HL_46665.2 | |
| HL_8WV1_122 | 1/a/2563:2569 | No text annotation | homologous HL_9DFE_060 HL_48677.1 | |
| HL_8WV1_123 | 1/a/2606:2611 | GNRA | homologous HL_4WF9_059 HL_34789.2 | |
| HL_8WV1_124 | 1/a/2670:2675 | GNRA | homologous HL_4WF9_060 HL_34789.2 | |
| HL_8WV1_125 | 1/a/2713:2718 | Other HL | homologous HL_9DFE_063 HL_64036.2 | |
| HL_8WV1_126 | 1/a/2758:2772 | No text annotation | homologous HL_9DFE_064 HL_53269.2 | |
| HL_8WV1_127 | 1/a/2829:2837 | No text annotation | homologous HL_9DFE_065 HL_37889.1 | |
| HL_8WV1_128 | 1/a/2866:2871 | GNRA | homologous HL_4WF9_065 HL_34789.2 | |
| HL_8WV1_129 | 1/b/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.2 | |
| HL_8WV1_130 | 1/b/86:91 | GNRA | homologous HL_7A0S_070 HL_34789.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8WV1_006 | No text annotation | ||
| HL_8WV1_010 | No text annotation | ||
| HL_8WV1_021 | No text annotation | ||
| HL_8WV1_022 | No text annotation | ||
| HL_8WV1_044 | No text annotation | ||
| HL_8WV1_046 | No text annotation | ||
| HL_8WV1_049 | No text annotation | ||
| HL_8WV1_060 | No text annotation | ||
| HL_8WV1_062 | No text annotation | ||
| HL_8WV1_069 | No text annotation | ||
| HL_8WV1_076 | No text annotation | ||
| HL_8WV1_079 | No text annotation | ||
| HL_8WV1_083 | Anticodon loop related | ||
| HL_8WV1_088 | No text annotation | ||
| HL_8WV1_111 | No text annotation | ||
| HL_8WV1_114 | No text annotation | ||
| HL_8WV1_120 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8WV1_001 | 1/A/24:30, 1/A/535:541 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_8WV1_002 | 1/A/80:84, 1/A/96:103 | Kink-turn | homologous IL_9DFE_004 IL_71972.1 | |
| IL_8WV1_003 | 1/A/84:86, 1/A/95:96 | Single stack bend | geometric IL_8C3A_076 NA | |
| IL_8WV1_004 | 1/A/177:183, 1/A/190:197 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 NA | |
| IL_8WV1_005 | 1/A/228:234, 1/A/242:247 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9DFE_007 IL_02666.1 | |
| IL_8WV1_006 | 1/A/291:292, 1/A/392:394 | Major groove platform | homologous IL_9DFE_008 IL_48076.8 | |
| IL_8WV1_007 | 1/A/304:308, 1/A/381:384 | No text annotation | homologous IL_9DFE_009 IL_74317.1 | |
| IL_8WV1_008 | 1/A/312:315, 1/A/373:377 | No text annotation | geometric IL_3NPQ_006 IL_65740.1 | |
| IL_8WV1_009 | 1/A/317:319, 1/A/367:371 | No text annotation | homologous IL_9DFE_011 IL_76658.1 | |
| IL_8WV1_010 | 1/A/587:589, 1/A/598:600 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.2 | |
| IL_8WV1_011 | 1/A/719:721, 1/A/853:855 | Isolated non-canonical cWW pair | geometric IL_8C3A_047 NA | |
| IL_8WV1_205 | 1/A/721:725, 1/A/846:853 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
| IL_8WV1_013 | 1/A/744:745, 1/A/810:812 | Single bulged A | homologous IL_7A0S_016 IL_14190.2 | |
| IL_8WV1_014 | 1/A/749:750, 1/A/775:777 | Single bulged G | homologous IL_7A0S_017 IL_28408.2 | |
| IL_8WV1_015 | 1/A/750:754, 1/A/771:775 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_8WV1_016 | 1/A/785:788, 1/A/803:805 | No text annotation | homologous IL_9DFE_020 IL_36931.2 | |
| IL_8WV1_017 | 1/A/884:885, 1/A/985:987 | Single stack bend | homologous IL_7A0S_022 IL_15011.2 | |
| IL_8WV1_018 | 1/A/891:893, 1/A/976:979 | Isolated cWH basepair | geometric IL_8VTW_024 NA | |
| IL_8WV1_019 | 1/A/891:897, 1/A/973:979 | No text annotation | geometric IL_8VTW_349 NA | |
| IL_8WV1_020 | 1/A/893:897, 1/A/973:976 | Stack outside cWW | homologous IL_9DFE_025 IL_08938.1 | |
| IL_8WV1_021 | 1/A/905:909, 1/A/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7A0S_111 IL_38862.5 | |
| IL_8WV1_022 | 1/A/909:910, 1/A/959:961 | Minor groove platform | homologous IL_7A0S_028 IL_34520.2 | |
| IL_8WV1_023 | 1/A/911:915, 1/A/955:958 | C-loop with bulged stacked A's | homologous IL_9DFE_028 IL_16301.1 | |
| IL_8WV1_025 | 1/A/922:924, 1/A/945:948 | No text annotation | homologous IL_9DFE_030 IL_82096.1 | |
| IL_8WV1_026 | 1/A/924:928, 1/A/941:945 | No text annotation | ||
| IL_8WV1_027 | 1/A/997:999, 1/A/1008:1010 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.2 | |
| IL_8WV1_028 | 1/A/1040:1042, 1/A/1205:1206 | Single bulged C | homologous IL_4WF9_035 IL_05642.2 | |
| IL_8WV1_029 | 1/A/1043:1048, 1/A/1199:1204 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_8WV1_030 | 1/A/1050:1057, 1/A/1196:1197 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_8WV1_031 | 1/A/1057:1059, 1/A/1195:1196 | Single bulged U | homologous IL_9DFE_037 IL_97561.2 | |
| IL_8WV1_206 | 1/A/1064:1070, 1/A/1185:1190 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_8WV1_033 | 1/A/1070:1076, 1/A/1170:1185 | No text annotation | homologous IL_9DFE_039 IL_50715.4 | |
| IL_8WV1_034 | 1/A/1077:1080, 1/A/1167:1169 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_8WV1_035 | 1/A/1089:1097, 1/A/1154:1158 | Kink-turn | homologous IL_9DFE_041 IL_99692.3 | |
| IL_8WV1_207 | 1/A/1105:1109, 1/A/1121:1125 | No text annotation | homologous IL_9DFE_042 NA | |
| IL_8WV1_208 | 1/A/1242:1243, 1/A/1293:1295 | No text annotation | ||
| IL_8WV1_038 | 1/A/1247:1251, 1/A/1286:1289 | No text annotation | homologous IL_9DFE_045 IL_68574.5 | |
| IL_8WV1_039 | 1/A/1253:1260, 1/A/1280:1284 | Kink-turn | homologous IL_9DFE_046 IL_90775.2 | |
| IL_8WV1_209 | 1/A/1264:1266, 1/A/1275:1276 | Single bulged A | homologous IL_9DFE_047 IL_14190.2 | |
| IL_8WV1_210 | 1/A/1365:1369, 1/A/1377:1379 | C-loop | homologous IL_9DFE_050 IL_63596.12 | |
| IL_8WV1_211 | 1/A/1397:1401, 1/A/1422:1426 | UAA/GAN | homologous IL_9DFE_051 IL_08938.1 | |
| IL_8WV1_043 | 1/A/1403:1407, 1/A/1416:1420 | tSH-tHW-tHS | homologous IL_9DFE_052 IL_05821.1 | |
| IL_8WV1_044 | 1/A/1461:1462, 1/A/1629:1633 | No text annotation | homologous IL_9DFE_053 IL_52564.1 | |
| IL_8WV1_045 | 1/A/1463:1467, 1/A/1624:1628 | UAA/GAN | homologous IL_9DFE_054 IL_08938.1 | |
| IL_8WV1_212 | 1/A/1479:1481, 1/A/1604:1607 | No text annotation | homologous IL_9DFE_055 IL_31990.1 | |
| IL_8WV1_047 | 1/A/1483:1486, 1/A/1598:1602 | No text annotation | homologous IL_9DFE_056 IL_74317.1 | |
| IL_8WV1_048 | 1/A/1495:1497, 1/A/1509:1510 | Single stack bend | homologous IL_7A0S_054 IL_15011.2 | |
| IL_8WV1_213 | 1/A/1498:1499, 1/A/1506:1508 | Single bulged A | homologous IL_9DFE_058 IL_14190.2 | |
| IL_8WV1_050 | 1/A/1516:1520, 1/A/1566:1569 | UAA/GAN variation | homologous IL_9DFE_059 IL_45790.1 | |
| IL_8WV1_214 | 1/A/1528:1529, 1/A/1552:1558 | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_8WV1_215 | 1/A/1535:1537, 1/A/1545:1546 | Single bulged A | homologous IL_9DFE_061 IL_14190.2 | |
| IL_8WV1_053 | 1/A/1572:1576, 1/A/1587:1593 | No text annotation | homologous IL_9DFE_062 IL_25943.1 | |
| IL_8WV1_054 | 1/A/1698:1703, 1/A/2026:2028 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_8WV1_055 | 1/A/1708:1710, 1/A/2020:2021 | Single stack bend | geometric IL_8C3A_076 NA | |
| IL_8WV1_216 | 1/A/1710:1712, 1/A/2017:2020 | No text annotation | ||
| IL_8WV1_057 | 1/A/1713:1716, 1/A/2015:2016 | Major groove platform; stack outside cWW | homologous IL_9DFE_065 IL_74641.2 | |
| IL_8WV1_058 | 1/A/1733:1738, 1/A/1743:1749 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_8WV1_217 | 1/A/1801:1803, 1/A/2001:2004 | Isolated non-canonical cWW pair | geometric IL_4V9K_064 IL_01003.2 | |
| IL_8WV1_060 | 1/A/1829:1835, 1/A/1844:1852 | No text annotation | homologous IL_9DFE_070 IL_17069.6 | |
| IL_8WV1_061 | 1/A/1868:1871, 1/A/1924:1925 | Minor groove platform, major groove intercalation | homologous IL_9DFE_071 IL_55206.1 | |
| IL_8WV1_218 | 1/A/1872:1873, 1/A/1920:1923 | No text annotation | homologous IL_9DFE_072 IL_77710.1 | |
| IL_8WV1_219 | 1/A/1877:1880, 1/A/1915:1916 | Minor groove platform | homologous IL_9DFE_073 IL_24264.1 | |
| IL_8WV1_220 | 1/A/1882:1886, 1/A/1909:1913 | UAA/GAN with extra stack | homologous IL_9DFE_074 IL_89021.3 | |
| IL_8WV1_065 | 1/A/1887:1891, 1/A/1904:1908 | Triple sheared | homologous IL_9DFE_075 IL_15190.2 | |
| IL_8WV1_066 | 1/A/1955:1956, 1/A/1986:1989 | Bulged stacked bases | geometric IL_7A0S_071 IL_24886.2 | |
| IL_8WV1_067 | 1/A/1956:1968, 1/A/1982:1986 | No text annotation | ||
| IL_8WV1_068 | 1/A/2072:2074, 1/A/2629:2630 | Major groove platform | homologous IL_4WF9_078 IL_48076.8 | |
| IL_8WV1_069 | 1/A/2089:2091, 1/A/2454:2455 | Single bulged U | homologous IL_5J7L_388 NA | |
| IL_8WV1_070 | 1/A/2092:2093, 1/A/2450:2453 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_8WV1_071 | 1/A/2103:2105, 1/A/2248:2251 | No text annotation | homologous IL_9DFE_082 IL_87316.1 | |
| IL_8WV1_072 | 1/A/2107:2109, 1/A/2244:2246 | Isolated non-canonical cWW pair | homologous IL_9DFE_083 IL_71625.2 | |
| IL_8WV1_221 | 1/A/2130:2132, 1/A/2201:2203 | No text annotation | homologous IL_9DFE_084 NA | |
| IL_8WV1_074 | 1/A/2132:2142, 1/A/2200:2201 | No text annotation | homologous IL_9DFE_085 NA | |
| IL_8WV1_075 | 1/A/2144:2149, 1/A/2183:2198 | No text annotation | ||
| IL_8WV1_222 | 1/A/2151:2158, 1/A/2177:2181 | No text annotation | homologous IL_9DFE_087 NA | |
| IL_8WV1_223 | 1/A/2309:2311, 1/A/2329:2333 | No text annotation | homologous IL_9DFE_088 IL_14250.1 | |
| IL_8WV1_078 | 1/A/2362:2365, 1/A/2376:2379 | Double sheared | homologous IL_9DFE_089 IL_58355.2 | |
| IL_8WV1_079 | 1/A/2413:2415, 1/A/2426:2427 | Major groove platform | homologous IL_7A0S_082 IL_48076.8 | |
| IL_8WV1_080 | 1/A/2466:2467, 1/A/2508:2510 | Major groove platform | homologous IL_9DFE_092 IL_48076.8 | |
| IL_8WV1_081 | 1/A/2469:2471, 1/A/2505:2506 | Major groove platform | homologous IL_9DFE_093 IL_48076.8 | |
| IL_8WV1_224 | 1/A/2471:2473, 1/A/2501:2505 | No text annotation | homologous IL_9DFE_094 IL_36931.2 | |
| IL_8WV1_083 | 1/A/2519:2520, 1/A/2592:2594 | Major groove platform | homologous IL_4WF9_094 IL_46637.2 | |
| IL_8WV1_084 | 1/A/2522:2525, 1/A/2583:2590 | No text annotation | ||
| IL_8WV1_085 | 1/A/2534:2536, 1/A/2551:2555 | No text annotation | geometric IL_8GLP_150 IL_09353.1 | |
| IL_8WV1_086 | 1/A/2603:2604, 1/A/2613:2615 | Single bulged A | homologous IL_9DFE_100 IL_14190.2 | |
| IL_8WV1_087 | 1/A/2648:2652, 1/A/2787:2795 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_8WV1_225 | 1/A/2663:2670, 1/A/2675:2681 | No text annotation | geometric IL_9AXU_109 IL_62167.2 | |
| IL_8WV1_089 | 1/A/2692:2696, 1/A/2738:2740 | C-loop | homologous IL_9DFE_103 IL_63596.12 | |
| IL_8WV1_226 | 1/A/2699:2703, 1/A/2731:2735 | UAA/GAN related, with intercalation | homologous IL_9DFE_104 IL_82016.1 | |
| IL_8WV1_091 | 1/A/2707:2708, 1/A/2723:2727 | No text annotation | homologous IL_9DFE_105 IL_44609.2 | |
| IL_8WV1_227 | 1/A/2750:2755, 1/A/2775:2780 | UAA/GAN with extra cWW | homologous IL_9DFE_106 IL_91079.1 | |
| IL_8WV1_093 | 1/A/2848:2849, 1/A/2888:2890 | Major groove intercalation | homologous IL_9DFE_107 IL_05642.2 | |
| IL_8WV1_094 | 1/A/2852:2856, 1/A/2880:2885 | No text annotation | ||
| IL_8WV1_095 | 1/A/2857:2862, 1/A/2875:2879 | No text annotation | homologous IL_9DFE_109 IL_48489.1 | |
| IL_8WV1_096 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.2 | |
| IL_8WV1_097 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_8WV1_228 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_73108.2 | |
| IL_8WV1_099 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_8WV1_100 | 1/B/71:79, 1/B/98:106 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 | |
| IL_8WV1_101 | 1/a/24:30, 1/a/535:541 | No text annotation | homologous IL_9DFE_001 IL_22311.1 | |
| IL_8WV1_102 | 1/a/36:37, 1/a/468:470 | Single bulged A | homologous IL_9DFE_002 IL_14190.2 | |
| IL_8WV1_229 | 1/a/42:43, 1/a/461:463 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8WV1_104 | 1/a/77:84, 1/a/96:106 | No text annotation | ||
| IL_8WV1_105 | 1/a/177:183, 1/a/190:197 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9DFE_006 IL_62167.2 | |
| IL_8WV1_106 | 1/a/228:234, 1/a/242:247 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9DFE_007 IL_02666.1 | |
| IL_8WV1_230 | 1/a/291:292, 1/a/392:394 | Major groove platform | homologous IL_9DFE_008 IL_48076.8 | |
| IL_8WV1_108 | 1/a/304:308, 1/a/381:384 | No text annotation | homologous IL_9DFE_009 IL_74317.1 | |
| IL_8WV1_109 | 1/a/312:314, 1/a/374:377 | No text annotation | homologous IL_9DFE_010 IL_87316.1 | |
| IL_8WV1_110 | 1/a/317:319, 1/a/367:371 | No text annotation | homologous IL_9DFE_011 IL_76658.1 | |
| IL_8WV1_111 | 1/a/507:510, 1/a/521:534 | No text annotation | geometric IL_8VTW_013 NA | |
| IL_8WV1_112 | 1/a/587:589, 1/a/598:600 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.2 | |
| IL_8WV1_113 | 1/a/629:633, 1/a/643:647 | No text annotation | homologous IL_9DFE_014 IL_66798.3 | |
| IL_8WV1_231 | 1/a/719:725, 1/a/846:855 | No text annotation | ||
| IL_8WV1_115 | 1/a/744:745, 1/a/810:812 | Single bulged A | homologous IL_7A0S_016 IL_14190.2 | |
| IL_8WV1_116 | 1/a/749:750, 1/a/775:777 | Single bulged G | homologous IL_7A0S_017 IL_28408.2 | |
| IL_8WV1_117 | 1/a/750:754, 1/a/771:775 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_8WV1_232 | 1/a/785:788, 1/a/803:805 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_36931.2 | |
| IL_8WV1_233 | 1/a/884:885, 1/a/985:987 | Single stack bend | homologous IL_7A0S_022 IL_15011.2 | |
| IL_8WV1_120 | 1/a/891:893, 1/a/976:979 | Isolated cWH basepair | geometric IL_8VTW_024 NA | |
| IL_8WV1_121 | 1/a/891:897, 1/a/973:979 | No text annotation | geometric IL_8VTW_349 NA | |
| IL_8WV1_122 | 1/a/893:897, 1/a/973:976 | Stack outside cWW | homologous IL_9DFE_025 IL_08938.1 | |
| IL_8WV1_123 | 1/a/905:909, 1/a/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7A0S_111 IL_38862.5 | |
| IL_8WV1_124 | 1/a/909:910, 1/a/959:961 | Minor groove platform | homologous IL_7A0S_028 IL_34520.2 | |
| IL_8WV1_125 | 1/a/911:915, 1/a/955:958 | C-loop | homologous IL_4WF9_033 IL_16301.1 | |
| IL_8WV1_126 | 1/a/922:926, 1/a/944:948 | Double sheared with non-canonical cWW | geometric IL_8CRE_114 NA | |
| IL_8WV1_127 | 1/a/927:928, 1/a/941:943 | Single bulged A | homologous IL_9DFE_032 IL_14190.2 | |
| IL_8WV1_128 | 1/a/997:999, 1/a/1008:1010 | Isolated non-canonical cWW pair | homologous IL_9DFE_033 IL_01003.2 | |
| IL_8WV1_234 | 1/a/1040:1042, 1/a/1205:1206 | Single bulged C | homologous IL_7A0S_032 IL_05642.2 | |
| IL_8WV1_130 | 1/a/1044:1048, 1/a/1199:1203 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_8WV1_131 | 1/a/1050:1057, 1/a/1196:1197 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_11411.1 | |
| IL_8WV1_132 | 1/a/1057:1059, 1/a/1195:1196 | Single bulged U | homologous IL_9DFE_037 IL_97561.2 | |
| IL_8WV1_134 | 1/a/1064:1070, 1/a/1185:1190 | No text annotation | homologous IL_9DFE_038 IL_57188.6 | |
| IL_8WV1_135 | 1/a/1070:1076, 1/a/1170:1185 | No text annotation | homologous IL_9DFE_039 IL_50715.4 | |
| IL_8WV1_136 | 1/a/1077:1080, 1/a/1167:1169 | Isolated non-canonical cWW pair | homologous IL_9DFE_040 IL_76400.1 | |
| IL_8WV1_137 | 1/a/1089:1097, 1/a/1154:1158 | Kink-turn | homologous IL_9DFE_041 IL_99692.3 | |
| IL_8WV1_235 | 1/a/1105:1109, 1/a/1121:1125 | No text annotation | homologous IL_9DFE_042 NA | |
| IL_8WV1_139 | 1/a/1241:1243, 1/a/1293:1296 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_8WV1_140 | 1/a/1247:1251, 1/a/1286:1289 | No text annotation | homologous IL_9DFE_045 IL_68574.5 | |
| IL_8WV1_141 | 1/a/1253:1260, 1/a/1280:1284 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_8WV1_142 | 1/a/1264:1266, 1/a/1275:1276 | Single bulged A | homologous IL_9DFE_047 IL_14190.2 | |
| IL_8WV1_143 | 1/a/1308:1315, 1/a/2033:2039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9DFE_048 IL_62167.2 | |
| IL_8WV1_144 | 1/a/1365:1369, 1/a/1377:1379 | C-loop | homologous IL_9DFE_050 IL_63596.12 | |
| IL_8WV1_145 | 1/a/1397:1401, 1/a/1422:1426 | UAA/GAN | homologous IL_9DFE_051 IL_08938.1 | |
| IL_8WV1_146 | 1/a/1403:1407, 1/a/1416:1420 | tSH-tHW-tHS | homologous IL_9DFE_052 IL_05821.1 | |
| IL_8WV1_147 | 1/a/1459:1462, 1/a/1629:1635 | No text annotation | ||
| IL_8WV1_148 | 1/a/1463:1467, 1/a/1624:1628 | UAA/GAN | homologous IL_9DFE_054 IL_08938.1 | |
| IL_8WV1_236 | 1/a/1479:1481, 1/a/1604:1607 | No text annotation | homologous IL_9DFE_055 IL_31990.1 | |
| IL_8WV1_150 | 1/a/1483:1486, 1/a/1598:1602 | No text annotation | homologous IL_9DFE_056 IL_74317.1 | |
| IL_8WV1_237 | 1/a/1495:1497, 1/a/1509:1510 | Single stack bend | homologous IL_9DFE_057 IL_15011.2 | |
| IL_8WV1_152 | 1/a/1498:1499, 1/a/1506:1508 | Single bulged A | homologous IL_9DFE_058 IL_14190.2 | |
| IL_8WV1_153 | 1/a/1516:1520, 1/a/1566:1569 | UAA/GAN variation | homologous IL_9DFE_059 IL_45790.1 | |
| IL_8WV1_238 | 1/a/1527:1529, 1/a/1552:1559 | No text annotation | ||
| IL_8WV1_239 | 1/a/1532:1534, 1/a/1548:1549 | Single stack bend | geometric IL_7KGA_003 IL_15011.2 | |
| IL_8WV1_156 | 1/a/1534:1535, 1/a/1546:1548 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_8WV1_157 | 1/a/1535:1537, 1/a/1545:1546 | Single bulged A | homologous IL_9DFE_061 IL_14190.2 | |
| IL_8WV1_158 | 1/a/1572:1576, 1/a/1587:1593 | No text annotation | homologous IL_9DFE_062 IL_25943.1 | |
| IL_8WV1_159 | 1/a/1698:1703, 1/a/2026:2028 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_8WV1_240 | 1/a/1710:1712, 1/a/2017:2019 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_8WV1_161 | 1/a/1713:1716, 1/a/2015:2016 | Major groove platform; stack outside cWW | homologous IL_9DFE_065 IL_74641.2 | |
| IL_8WV1_162 | 1/a/1733:1738, 1/a/1743:1749 | No text annotation | homologous IL_9DFE_068 IL_20700.1 | |
| IL_8WV1_241 | 1/a/1801:1802, 1/a/2002:2004 | Single bulged A | homologous IL_9DFE_069 IL_14190.2 | |
| IL_8WV1_164 | 1/a/1829:1835, 1/a/1844:1852 | No text annotation | homologous IL_9DFE_070 IL_17069.6 | |
| IL_8WV1_165 | 1/a/1868:1871, 1/a/1924:1925 | Minor groove platform, major groove intercalation | homologous IL_9DFE_071 IL_55206.1 | |
| IL_8WV1_242 | 1/a/1872:1873, 1/a/1920:1923 | No text annotation | homologous IL_9DFE_072 IL_77710.1 | |
| IL_8WV1_243 | 1/a/1876:1880, 1/a/1915:1917 | No text annotation | ||
| IL_8WV1_168 | 1/a/1882:1886, 1/a/1909:1913 | UAA/GAN with extra stack | homologous IL_9DFE_074 IL_89021.3 | |
| IL_8WV1_169 | 1/a/1887:1891, 1/a/1904:1908 | Triple sheared | homologous IL_9DFE_075 IL_15190.2 | |
| IL_8WV1_170 | 1/a/1955:1956, 1/a/1986:1989 | Bulged stacked bases | homologous IL_7A0S_071 IL_24886.2 | |
| IL_8WV1_171 | 1/a/1956:1967, 1/a/1983:1986 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_8WV1_244 | 1/a/2072:2074, 1/a/2629:2630 | Major groove platform | homologous IL_4WF9_078 IL_48076.8 | |
| IL_8WV1_245 | 1/a/2076:2079, 1/a/2623:2627 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_8WV1_174 | 1/a/2089:2091, 1/a/2454:2455 | Single bulged U | homologous IL_7A0S_075 IL_97561.2 | |
| IL_8WV1_175 | 1/a/2103:2105, 1/a/2248:2251 | No text annotation | homologous IL_9DFE_082 IL_87316.1 | |
| IL_8WV1_176 | 1/a/2107:2109, 1/a/2244:2246 | Isolated non-canonical cWW pair | homologous IL_9DFE_083 IL_71625.2 | |
| IL_8WV1_177 | 1/a/2130:2142, 1/a/2200:2203 | No text annotation | ||
| IL_8WV1_246 | 1/a/2143:2149, 1/a/2183:2199 | No text annotation | ||
| IL_8WV1_179 | 1/a/2151:2158, 1/a/2177:2181 | No text annotation | homologous IL_9DFE_087 NA | |
| IL_8WV1_180 | 1/a/2309:2311, 1/a/2329:2333 | No text annotation | homologous IL_9DFE_088 IL_14250.1 | |
| IL_8WV1_181 | 1/a/2362:2365, 1/a/2376:2379 | Double sheared | homologous IL_9DFE_089 IL_58355.2 | |
| IL_8WV1_182 | 1/a/2413:2415, 1/a/2426:2427 | Major groove platform | homologous IL_9DFE_090 IL_48076.8 | |
| IL_8WV1_247 | 1/a/2466:2467, 1/a/2508:2510 | Major groove platform | homologous IL_4WF9_090 IL_48076.8 | |
| IL_8WV1_184 | 1/a/2469:2471, 1/a/2505:2506 | Major groove platform | homologous IL_9DFE_093 IL_48076.8 | |
| IL_8WV1_185 | 1/a/2471:2473, 1/a/2501:2505 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.2 | |
| IL_8WV1_186 | 1/a/2478:2482, 1/a/2492:2496 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.2 | |
| IL_8WV1_187 | 1/a/2519:2520, 1/a/2592:2594 | Major groove platform | homologous IL_7A0S_088 IL_46637.2 | |
| IL_8WV1_248 | 1/a/2522:2524, 1/a/2586:2590 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 NA | |
| IL_8WV1_189 | 1/a/2524:2525, 1/a/2583:2586 | No text annotation | homologous IL_9DFE_098 IL_44609.2 | |
| IL_8WV1_190 | 1/a/2534:2535, 1/a/2552:2555 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.2 | |
| IL_8WV1_191 | 1/a/2603:2604, 1/a/2613:2615 | Single bulged A | homologous IL_9DFE_100 IL_14190.2 | |
| IL_8WV1_192 | 1/a/2648:2652, 1/a/2787:2795 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_8WV1_193 | 1/a/2664:2670, 1/a/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 NA | |
| IL_8WV1_194 | 1/a/2692:2696, 1/a/2738:2740 | C-loop | homologous IL_9DFE_103 IL_63596.12 | |
| IL_8WV1_249 | 1/a/2699:2703, 1/a/2731:2735 | UAA/GAN related, with intercalation | homologous IL_9DFE_104 IL_82016.1 | |
| IL_8WV1_196 | 1/a/2707:2708, 1/a/2723:2727 | No text annotation | homologous IL_9DFE_105 IL_44609.2 | |
| IL_8WV1_197 | 1/a/2750:2755, 1/a/2775:2780 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_8WV1_198 | 1/a/2853:2855, 1/a/2881:2884 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_8WV1_199 | 1/a/2857:2862, 1/a/2875:2879 | No text annotation | homologous IL_9DFE_109 IL_48489.1 | |
| IL_8WV1_200 | 1/b/17:18, 1/b/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.2 | |
| IL_8WV1_250 | 1/b/23:28, 1/b/56:60 | No text annotation | homologous IL_9DFE_111 IL_18472.5 | |
| IL_8WV1_202 | 1/b/30:31, 1/b/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.2 | |
| IL_8WV1_251 | 1/b/34:38, 1/b/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_8WV1_204 | 1/b/71:79, 1/b/98:106 | Bacterial 5S Loop E | homologous IL_9DFE_114 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8WV1_012 | No text annotation | ||
| IL_8WV1_024 | Tandem non-canonical cWW pairs | ||
| IL_8WV1_032 | No text annotation | ||
| IL_8WV1_036 | No text annotation | ||
| IL_8WV1_037 | Isolated cWS basepair | ||
| IL_8WV1_040 | Isolated non-canonical cWW pair | ||
| IL_8WV1_041 | No text annotation | ||
| IL_8WV1_042 | UAA/GAN with extra cWW | ||
| IL_8WV1_046 | No text annotation | ||
| IL_8WV1_049 | Isolated non-canonical cWW contact | ||
| IL_8WV1_051 | No text annotation | ||
| IL_8WV1_052 | Isolated non-canonical cWW pair | ||
| IL_8WV1_056 | No text annotation | ||
| IL_8WV1_059 | Tandem non-canonical cWW pairs | ||
| IL_8WV1_062 | No text annotation | ||
| IL_8WV1_063 | No text annotation | ||
| IL_8WV1_064 | No text annotation | ||
| IL_8WV1_073 | Tandem non-canonical cWW pairs | ||
| IL_8WV1_076 | No text annotation | ||
| IL_8WV1_077 | No text annotation | ||
| IL_8WV1_082 | No text annotation | ||
| IL_8WV1_088 | No text annotation | ||
| IL_8WV1_090 | No text annotation | ||
| IL_8WV1_092 | No text annotation | ||
| IL_8WV1_098 | No text annotation | ||
| IL_8WV1_103 | Minor groove platform with extra cWW | ||
| IL_8WV1_107 | No text annotation | ||
| IL_8WV1_114 | No text annotation | ||
| IL_8WV1_118 | No text annotation | ||
| IL_8WV1_119 | No text annotation | ||
| IL_8WV1_129 | Isolated non-canonical cWW pair | ||
| IL_8WV1_133 | Isolated non-canonical cWW pair | ||
| IL_8WV1_138 | No text annotation | ||
| IL_8WV1_149 | No text annotation | ||
| IL_8WV1_151 | No text annotation | ||
| IL_8WV1_154 | No text annotation | ||
| IL_8WV1_155 | No text annotation | ||
| IL_8WV1_160 | No text annotation | ||
| IL_8WV1_163 | Isolated non-canonical cWW pair | ||
| IL_8WV1_166 | No text annotation | ||
| IL_8WV1_167 | No text annotation | ||
| IL_8WV1_172 | No text annotation | ||
| IL_8WV1_173 | No text annotation | ||
| IL_8WV1_178 | No text annotation | ||
| IL_8WV1_183 | No text annotation | ||
| IL_8WV1_188 | Tandem non-canonical cWW pairs | ||
| IL_8WV1_195 | No text annotation | ||
| IL_8WV1_201 | No text annotation | ||
| IL_8WV1_203 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8WV1_037 | 1/A/30:31, 1/A/500:510, 1/A/521:535 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_8WV1_002 | 1/A/32:37, 1/A/468:487, 1/A/494:499 | No text annotation | ||
| J3_8WV1_003 | 1/A/55:56, 1/A/69:75, 1/A/108:112 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_8WV1_004 | 1/A/258:262, 1/A/282:289, 1/A/396:397 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_8WV1_005 | 1/A/321:325, 1/A/340:349, 1/A/361:365 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_8WV1_006 | 1/A/730:736, 1/A/820:824, 1/A/834:841 | No text annotation | ||
| J3_8WV1_007 | 1/A/745:747, 1/A/779:783, 1/A/807:810 | No text annotation | homologous J3_7A0S_005 J3_69816.1 | |
| J3_8WV1_008 | 1/A/1101:1103, 1/A/1127:1137, 1/A/1146:1150 | No text annotation | ||
| J3_8WV1_009 | 1/A/1344:1349, 1/A/1671:1673, 1/A/1686:1689 | No text annotation | homologous J3_9DFE_010 J3_32852.7 | |
| J3_8WV1_010 | 1/A/1352:1355, 1/A/1651:1657, 1/A/1666:1668 | No text annotation | homologous J3_9DFE_011 J3_47341.1 | |
| J3_8WV1_038 | 1/A/1390:1396, 1/A/1427:1431, 1/A/1448:1449 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_8WV1_012 | 1/A/1470:1475, 1/A/1611:1612, 1/A/1615:1621 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_8WV1_013 | 1/A/2113:2115, 1/A/2218:2222, 1/A/2235:2240 | No text annotation | homologous J3_9DFE_014 J3_17460.1 | |
| J3_8WV1_039 | 1/A/2294:2296, 1/A/2396:2407, 1/A/2433:2439 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_8WV1_015 | 1/A/2307:2309, 1/A/2333:2335, 1/A/2344:2349 | No text annotation | homologous J3_9DFE_016 J3_05327.1 | |
| J3_8WV1_040 | 1/A/2529:2532, 1/A/2557:2559, 1/A/2573:2579 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_8WV1_017 | 1/A/2824:2825, 1/A/2841:2846, 1/A/2892:2896 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_8WV1_041 | 1/B/11:16, 1/B/68:69, 1/B/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_8WV1_019 | 1/a/30:31, 1/a/500:507, 1/a/534:535 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_8WV1_020 | 1/a/30:31, 1/a/500:510, 1/a/521:535 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_8WV1_042 | 1/a/32:35, 1/a/471:487, 1/a/494:499 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_8WV1_022 | 1/a/55:56, 1/a/69:75, 1/a/108:112 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_8WV1_023 | 1/a/287:289, 1/a/396:402, 1/a/426:431 | No text annotation | ||
| J3_8WV1_024 | 1/a/321:325, 1/a/340:349, 1/a/361:365 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_8WV1_025 | 1/a/730:736, 1/a/820:824, 1/a/834:841 | No text annotation | ||
| J3_8WV1_026 | 1/a/745:747, 1/a/779:783, 1/a/807:810 | No text annotation | homologous J3_9DFE_008 J3_69816.1 | |
| J3_8WV1_027 | 1/a/1101:1103, 1/a/1127:1137, 1/a/1146:1150 | No text annotation | ||
| J3_8WV1_043 | 1/a/1344:1349, 1/a/1671:1673, 1/a/1686:1689 | No text annotation | homologous J3_9DFE_010 J3_32852.7 | |
| J3_8WV1_029 | 1/a/1352:1359, 1/a/1649:1657, 1/a/1666:1668 | No text annotation | ||
| J3_8WV1_044 | 1/a/1390:1396, 1/a/1427:1431, 1/a/1448:1449 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_8WV1_031 | 1/a/1470:1475, 1/a/1611:1612, 1/a/1615:1621 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_8WV1_032 | 1/a/2113:2115, 1/a/2218:2222, 1/a/2235:2240 | No text annotation | homologous J3_9DFE_014 J3_17460.1 | |
| J3_8WV1_033 | 1/a/2307:2309, 1/a/2333:2335, 1/a/2344:2349 | No text annotation | homologous J3_9DFE_016 J3_05327.1 | |
| J3_8WV1_034 | 1/a/2529:2532, 1/a/2557:2559, 1/a/2573:2579 | No text annotation | homologous J3_9DFE_017 J3_32601.6 | |
| J3_8WV1_045 | 1/a/2824:2825, 1/a/2841:2849, 1/a/2888:2896 | No text annotation | ||
| J3_8WV1_036 | 1/b/11:16, 1/b/68:69, 1/b/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J4_8WV1_001 | 1/A/257:258, 1/A/397:402, 1/A/426:433, 1/A/448:451 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_8WV1_002 | 1/A/1308:1322, 1/A/1340:1341, 1/A/1692:1695, 1/A/2031:2039 | No text annotation | ||
| J4_8WV1_003 | 1/A/1356:1360, 1/A/1384:1389, 1/A/1450:1451, 1/A/1643:1650 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_8WV1_004 | 1/A/1490:1492, 1/A/1513:1514, 1/A/1571:1572, 1/A/1593:1594 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_8WV1_005 | 1/A/1803:1807, 1/A/1819:1824, 1/A/1857:1861, 1/A/1997:2001 | No text annotation | ||
| J4_8WV1_016 | 1/A/1864:1866, 1/A/1927:1928, 1/A/1946:1955, 1/A/1989:1994 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_8WV1_007 | 1/A/2297:2301, 1/A/2355:2359, 1/A/2382:2384, 1/A/2393:2395 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_8WV1_008 | 1/A/2655:2658, 1/A/2686:2688, 1/A/2744:2748, 1/A/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_8WV1_017 | 1/a/257:262, 1/a/282:287, 1/a/431:433, 1/a/448:451 | No text annotation | ||
| J4_8WV1_010 | 1/a/1316:1322, 1/a/1340:1341, 1/a/1692:1695, 1/a/2031:2032 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_8WV1_018 | 1/a/1359:1360, 1/a/1384:1389, 1/a/1450:1451, 1/a/1643:1649 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_8WV1_012 | 1/a/1490:1492, 1/a/1513:1514, 1/a/1571:1572, 1/a/1593:1594 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_8WV1_013 | 1/a/1803:1807, 1/a/1819:1825, 1/a/1856:1861, 1/a/1997:2001 | No text annotation | ||
| J4_8WV1_014 | 1/a/1861:1868, 1/a/1925:1928, 1/a/1946:1955, 1/a/1989:1997 | No text annotation | ||
| J4_8WV1_019 | 1/a/2655:2658, 1/a/2686:2688, 1/a/2744:2748, 1/a/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J5_8WV1_021 | 1/A/42:45, 1/A/168:173, 1/A/201:224, 1/A/251:255, 1/A/453:463 | No text annotation | ||
| J5_8WV1_022 | 1/A/46:53, 1/A/114:119, 1/A/128:129, 1/A/148:150, 1/A/165:167 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8WV1_003 | 1/A/257:262, 1/A/282:289, 1/A/396:402, 1/A/426:433, 1/A/448:451 | No text annotation | ||
| J5_8WV1_004 | 1/A/556:558, 1/A/583:587, 1/A/600:602, 1/A/1307:1308, 1/A/2039:2040 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_8WV1_023 | 1/A/607:612, 1/A/715:718, 1/A/856:859, 1/A/1240:1241, 1/A/1296:1302 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_8WV1_006 | 1/A/1356:1360, 1/A/1384:1396, 1/A/1427:1432, 1/A/1447:1451, 1/A/1643:1650 | No text annotation | ||
| J5_8WV1_024 | 1/A/1713:1730, 1/A/1752:1754, 1/A/1782:1783, 1/A/1787:1795, 1/A/2010:2016 | No text annotation | ||
| J5_8WV1_025 | 1/A/1716:1730, 1/A/1752:1754, 1/A/1782:1783, 1/A/1787:1795, 1/A/2010:2015 | No text annotation | ||
| J5_8WV1_009 | 1/A/2076:2086, 1/A/2458:2466, 1/A/2510:2519, 1/A/2594:2600, 1/A/2618:2627 | No text annotation | ||
| J5_8WV1_026 | 1/A/2096:2099, 1/A/2255:2258, 1/A/2270:2271, 1/A/2293:2294, 1/A/2439:2447 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J5_8WV1_027 | 1/a/46:53, 1/a/114:119, 1/a/128:129, 1/a/148:150, 1/a/165:167 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_8WV1_012 | 1/a/556:558, 1/a/583:587, 1/a/600:602, 1/a/1307:1308, 1/a/2039:2040 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_8WV1_013 | 1/a/607:612, 1/a/715:718, 1/a/856:859, 1/a/1240:1241, 1/a/1296:1302 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_8WV1_028 | 1/a/1352:1360, 1/a/1384:1389, 1/a/1450:1451, 1/a/1643:1657, 1/a/1666:1668 | No text annotation | ||
| J5_8WV1_014 | 1/a/1352:1362, 1/a/1382:1389, 1/a/1450:1451, 1/a/1643:1657, 1/a/1666:1668 | No text annotation | ||
| J5_8WV1_029 | 1/a/1713:1729, 1/a/1753:1755, 1/a/1781:1783, 1/a/1787:1795, 1/a/2010:2016 | No text annotation | ||
| J5_8WV1_030 | 1/a/1716:1729, 1/a/1753:1755, 1/a/1781:1783, 1/a/1787:1795, 1/a/2010:2015 | No text annotation | ||
| J5_8WV1_017 | 1/a/2079:2086, 1/a/2458:2466, 1/a/2510:2519, 1/a/2594:2600, 1/a/2618:2623 | No text annotation | ||
| J5_8WV1_031 | 1/a/2092:2099, 1/a/2255:2258, 1/a/2270:2271, 1/a/2293:2294, 1/a/2439:2453 | No text annotation | ||
| J5_8WV1_020 | 1/a/2294:2301, 1/a/2355:2359, 1/a/2382:2384, 1/a/2393:2407, 1/a/2433:2439 | No text annotation | ||
| J6_8WV1_001 | 1/A/2095:2099, 1/A/2255:2258, 1/A/2270:2271, 1/A/2293:2297, 1/A/2395:2407, 1/A/2433:2448 | No text annotation | ||
| J6_8WV1_003 | 1/A/2096:2099, 1/A/2255:2258, 1/A/2270:2271, 1/A/2293:2296, 1/A/2396:2407, 1/A/2433:2447 | No text annotation | ||
| J6_8WV1_004 | 1/a/44:45, 1/a/168:173, 1/a/201:213, 1/a/220:224, 1/a/251:255, 1/a/453:460 | No text annotation | ||
| J7_8WV1_003 | 1/A/864:869, 1/A/882:883, 1/A/988:991, 1/A/1016:1023, 1/A/1032:1037, 1/A/1209:1210, 1/A/1230:1235 | No text annotation | ||
| J7_8WV1_004 | 1/a/864:869, 1/a/882:883, 1/a/988:991, 1/a/1016:1022, 1/a/1033:1037, 1/a/1209:1210, 1/a/1230:1235 | No text annotation | ||
| J8_8WV1_003 | 1/A/8:15, 1/A/550:556, 1/A/2040:2045, 1/A/2062:2065, 1/A/2637:2642, 1/A/2801:2804, 1/A/2816:2821, 1/A/2899:2904 | No text annotation | ||
| J8_8WV1_004 | 1/a/8:15, 1/a/550:556, 1/a/2040:2045, 1/a/2062:2065, 1/a/2637:2642, 1/a/2801:2804, 1/a/2816:2821, 1/a/2899:2904 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8WV1_001 | No text annotation | ||
| J3_8WV1_011 | No text annotation | ||
| J3_8WV1_014 | No text annotation | ||
| J3_8WV1_016 | No text annotation | ||
| J3_8WV1_018 | No text annotation | ||
| J3_8WV1_021 | No text annotation | ||
| J3_8WV1_028 | No text annotation | ||
| J3_8WV1_030 | No text annotation | ||
| J3_8WV1_035 | No text annotation | ||
| J4_8WV1_006 | No text annotation | ||
| J4_8WV1_009 | No text annotation | ||
| J4_8WV1_011 | No text annotation | ||
| J4_8WV1_015 | No text annotation | ||
| J5_8WV1_001 | No text annotation | ||
| J5_8WV1_002 | No text annotation | ||
| J5_8WV1_005 | No text annotation | ||
| J5_8WV1_007 | No text annotation | ||
| J5_8WV1_008 | No text annotation | ||
| J5_8WV1_010 | No text annotation | ||
| J5_8WV1_011 | No text annotation | ||
| J5_8WV1_015 | No text annotation | ||
| J5_8WV1_016 | No text annotation | ||
| J5_8WV1_018 | No text annotation | ||
| J5_8WV1_019 | No text annotation | ||
| J6_8WV1_002 | No text annotation | ||
| J7_8WV1_001 | No text annotation | ||
| J7_8WV1_002 | No text annotation | ||
| J8_8WV1_001 | No text annotation | ||
| J8_8WV1_002 | No text annotation |
Coloring options: