HL_8WV1_020

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

8WV1|1|A|A|828, 8WV1|1|A|A|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_020 not in the Motif Atlas

Homologous match to HL_9DFE_022

Geometric discrepancy: 0.1726

The information below is about HL_9DFE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

8WV1|1|A|U|826
8WV1|1|A|G|827
8WV1|1|A|A|828
8WV1|1|A|A|829
8WV1|1|A|A|830
8WV1|1|A|A|831
8WV1|1|A|G|832

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2