HL_8WV1_023

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

8WV1|1|A|U|1003, 8WV1|1|A|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_023 not in the Motif Atlas

Homologous match to HL_9DFE_025

Geometric discrepancy: 0.193

The information below is about HL_9DFE_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8WV1|1|A|C|1000
8WV1|1|A|G|1001
8WV1|1|A|A|1002
8WV1|1|A|U|1003
8WV1|1|A|A|1004
8WV1|1|A|A|1005
8WV1|1|A|C|1006
8WV1|1|A|G|1007

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16