HL_8WV1_024

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_024 not in the Motif Atlas

Homologous match to HL_9DFE_026

Geometric discrepancy: 0.1616

The information below is about HL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8WV1|1|A|G|1024
8WV1|1|A|G|1025
8WV1|1|A|A|1026
8WV1|1|A|A|1027
8WV1|1|A|C|1028
8WV1|1|A|A|1029
8WV1|1|A|A|1030
8WV1|1|A|C|1031

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L20

Chain Y

50S ribosomal protein L30