HL_8WV1_025

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8WV1|1|A|U|1112, 8WV1|1|A|A|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_025 not in the Motif Atlas

Homologous match to HL_9DFE_027

Geometric discrepancy: 0.3274

The information below is about HL_9DFE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|A|C|1110
8WV1|1|A|U|1111
8WV1|1|A|U|1112
8WV1|1|A|A|1113
8WV1|1|A|G|1114
8WV1|1|A|A|1115
8WV1|1|A|A|1116
8WV1|1|A|G|1117
8WV1|1|A|C|1118
8WV1|1|A|A|1119
8WV1|1|A|G|1120

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain U

50S ribosomal protein L25