HL_8WV1_048

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

8WV1|1|A|U|2230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_048 not in the Motif Atlas

Homologous match to HL_9DFE_050

Geometric discrepancy: 0.2457

The information below is about HL_9DFE_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8WV1|1|A|C|2226
8WV1|1|A|G|2227
8WV1|1|A|G|2228
8WV1|1|A|A|2229
8WV1|1|A|U|2230
8WV1|1|A|G|2231

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

Large ribosomal subunit protein bL9

Chain W

Large ribosomal subunit protein bL28