HL_8WV1_051
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8WV1_051 not in the Motif Atlas
- Homologous match to HL_9DFE_054
- Geometric discrepancy: 0.1125
- The information below is about HL_9DFE_054
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8WV1|1|A|C|2336
8WV1|1|A|G|2337
8WV1|1|A|C|2338
8WV1|1|A|A|2339
8WV1|1|A|A|2340
8WV1|1|A|G|2341
8WV1|1|A|G|2342
8WV1|1|A|G|2343
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L16
- Chain U
- 50S ribosomal protein L25
- Chain V
- Large ribosomal subunit protein bL27
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