HL_8WV1_056

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

8WV1|1|A|G|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_056 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.1713

The information below is about HL_9DFE_059

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8WV1|1|A|U|2540
8WV1|1|A|G|2541
8WV1|1|A|A|2542
8WV1|1|A|A|2543
8WV1|1|A|G|2544
8WV1|1|A|A|2545
8WV1|1|A|A|2546
8WV1|1|A|G|2547

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6