HL_8WV1_075

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

8WV1|1|a|G|353, 8WV1|1|a|A|354, 8WV1|1|a|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_075 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1992

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

8WV1|1|a|G|351
8WV1|1|a|U|352
8WV1|1|a|G|353
8WV1|1|a|A|354
8WV1|1|a|A|355
8WV1|1|a|A|356
8WV1|1|a|G|357
8WV1|1|a|C|358
8WV1|1|a|C|359

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

Large ribosomal subunit protein uL24