HL_8WV1_079

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CCCGGGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_079 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3535

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8WV1|1|a|C|511
8WV1|1|a|C|512
8WV1|1|a|C|513
8WV1|1|a|G|514
8WV1|1|a|G|515
8WV1|1|a|G|516
8WV1|1|a|A|517
8WV1|1|a|G|518
8WV1|1|a|G|519
8WV1|1|a|G|520

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain t

Large ribosomal subunit protein uL24