HL_8WV1_098

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8WV1|1|a|U|1442, 8WV1|1|a|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_098 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.1928

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8WV1|1|a|G|1435
8WV1|1|a|U|1436
8WV1|1|a|U|1437
8WV1|1|a|A|1438
8WV1|1|a|A|1439
8WV1|1|a|U|1440
8WV1|1|a|A|1441
8WV1|1|a|U|1442
8WV1|1|a|U|1443
8WV1|1|a|C|1444

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23