HL_8WV1_100

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8WV1|1|a|C|1539, 8WV1|1|a|U|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_100 not in the Motif Atlas

Homologous match to HL_9DFE_036

Geometric discrepancy: 0.3422

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8WV1|1|a|G|1538
8WV1|1|a|C|1539
8WV1|1|a|A|1540
8WV1|1|a|A|1541
8WV1|1|a|A|1542
8WV1|1|a|U|1543
8WV1|1|a|C|1544

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2