HL_8WV1_104

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8WV1|1|a|U|1740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_104 not in the Motif Atlas

Homologous match to HL_9DFE_040

Geometric discrepancy: 0.1625

The information below is about HL_9DFE_040

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

8WV1|1|a|C|1738
8WV1|1|a|U|1739
8WV1|1|a|U|1740
8WV1|1|a|C|1741
8WV1|1|a|G|1742
8WV1|1|a|G|1743

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2