HL_8WV1_109

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_109 not in the Motif Atlas

Homologous match to HL_9DFE_045

Geometric discrepancy: 0.1795

The information below is about HL_9DFE_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8WV1|1|a|U|1895
8WV1|1|a|G|1896
8WV1|1|a|C|1897
8WV1|1|a|A|1898
8WV1|1|a|A|1899
8WV1|1|a|G|1900

Current chains

Chain a

23S rRNA

Nearby chains