HL_8WV1_117

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_117 not in the Motif Atlas

Homologous match to HL_9DFE_055

Geometric discrepancy: 0.1465

The information below is about HL_9DFE_055

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8WV1|1|a|C|2367
8WV1|1|a|C|2368
8WV1|1|a|U|2369
8WV1|1|a|G|2370
8WV1|1|a|C|2371
8WV1|1|a|A|2372
8WV1|1|a|A|2373
8WV1|1|a|G|2374

Current chains

Chain a

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain k

50S ribosomal protein L15

Chain v

Large ribosomal subunit protein bL27