HL_8WV1_138

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WV1_138 not in the Motif Atlas

Homologous match to HL_9DFE_063

Geometric discrepancy: 0.2779

The information below is about HL_9DFE_063

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

8WV1|1|A|C|2713
8WV1|1|A|U|2714
8WV1|1|A|C|2715
8WV1|1|A|C|2716
8WV1|1|A|A|2717
8WV1|1|A|G|2718

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L17