HL_8XP2_003
3D structure
- PDB id
- 8XP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with LARP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUAAUUCU
- Length
- 9 nucleotides
- Bulged bases
- 8XP2|1|S2|U|160, 8XP2|1|S2|U|161
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XP2_003 not in the Motif Atlas
- Geometric match to HL_9PN5_103
- Geometric discrepancy: 0.3462
- The information below is about HL_9PN5_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22758.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8XP2|1|S2|G|155
8XP2|1|S2|G|156
8XP2|1|S2|U|157
8XP2|1|S2|A|158
8XP2|1|S2|A|159
8XP2|1|S2|U|160
8XP2|1|S2|U|161
8XP2|1|S2|C|162
8XP2|1|S2|U|163
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
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