HL_8XP2_010

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCAAGGA

Length

8 nucleotides

Bulged bases

8XP2|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XP2_010 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3451

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8XP2|1|S2|U|461
8XP2|1|S2|C|462
8XP2|1|S2|C|463
8XP2|1|S2|A|464
8XP2|1|S2|A|465
8XP2|1|S2|G|466
8XP2|1|S2|G|467
8XP2|1|S2|A|468

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6