HL_8XP2_036

3D structure

PDB id

8XP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8XP2|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XP2_036 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.2853

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8XP2|1|S2|C|462
8XP2|1|S2|C|463
8XP2|1|S2|A|464
8XP2|1|S2|A|465
8XP2|1|S2|G|466
8XP2|1|S2|G|467

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6