HL_8XP3_006

3D structure

PDB id

8XP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with LARP1 and LRRC47

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8XP3|1|S2|C|324, 8XP3|1|S2|C|325, 8XP3|1|S2|C|326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XP3_006 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3604

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8XP3|1|S2|C|322
8XP3|1|S2|C|323
8XP3|1|S2|C|324
8XP3|1|S2|C|325
8XP3|1|S2|C|326
8XP3|1|S2|G|327
8XP3|1|S2|U|328
8XP3|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6