HL_8XSX_001

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

8XSX|1|CC|C|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_001 not in the Motif Atlas

Homologous match to HL_1YFG_001

Geometric discrepancy: 0.1817

The information below is about HL_1YFG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|CC|C|13
8XSX|1|CC|A|14
8XSX|1|CC|G|15
8XSX|1|CC|C|16
8XSX|1|CC|G|17
8XSX|1|CC|G|18
8XSX|1|CC|A|19
8XSX|1|CC|A|20
8XSX|1|CC|G|21

Current chains

Chain CC

E-tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA