HL_8XSX_019

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8XSX|1|L5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_019 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0566

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8XSX|1|L5|U|1317
8XSX|1|L5|C|1318
8XSX|1|L5|U|1319
8XSX|1|L5|U|1320
8XSX|1|L5|G|1321
8XSX|1|L5|A|1322
8XSX|1|L5|A|1323
8XSX|1|L5|A|1324
8XSX|1|L5|C|1325
8XSX|1|L5|A|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32