HL_8XSX_033
3D structure
- PDB id
- 8XSX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 8XSX|1|L5|A|1984
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XSX_033 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.2617
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8XSX|1|L5|C|1978
8XSX|1|L5|A|1979
8XSX|1|L5|U|1980
8XSX|1|L5|G|1981
8XSX|1|L5|G|1982
8XSX|1|L5|A|1983
8XSX|1|L5|A|1984
8XSX|1|L5|G|1985
8XSX|1|L5|U|1986
8XSX|1|L5|C|1987
8XSX|1|L5|G|1988
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain LK
- 60S ribosomal protein L12
Coloring options: