HL_8XSX_092

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8XSX|1|S2|C|324

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_092 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3524

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8XSX|1|S2|C|322
8XSX|1|S2|C|323
8XSX|1|S2|C|324
8XSX|1|S2|C|325
8XSX|1|S2|C|326
8XSX|1|S2|G|327
8XSX|1|S2|U|328
8XSX|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24