HL_8XSX_125

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCCAAGGA

Length

8 nucleotides

Bulged bases

8XSX|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSX_125 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3335

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8XSX|1|S2|U|461
8XSX|1|S2|C|462
8XSX|1|S2|C|463
8XSX|1|S2|A|464
8XSX|1|S2|A|465
8XSX|1|S2|G|466
8XSX|1|S2|G|467
8XSX|1|S2|A|468

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6