HL_8XSY_120
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCGGGGUGCCCUGGCGGCCCUG*G
- Length
- 23 nucleotides
- Bulged bases
- 8XSY|1|S2|U|1761, 8XSY|1|S2|C|1774, 8XSY|1|S2|C|1769, 8XSY|1|S2|G|1770, 8XSY|1|S2|C|1774
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XSY_120 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2012
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8XSY|1|S2|C|1755
8XSY|1|S2|C|1756
8XSY|1|S2|G|1757
8XSY|1|S2|G|1758
8XSY|1|S2|G|1759
8XSY|1|S2|G|1760
8XSY|1|S2|U|1761
8XSY|1|S2|G|1771
8XSY|1|S2|C|1772
8XSY|1|S2|C|1773
8XSY|1|S2|C|1774
8XSY|1|S2|U|1775
8XSY|1|S2|G|1776
8XSY|1|S2|G|1777
8XSY|1|S2|C|1769
8XSY|1|S2|G|1770
8XSY|1|S2|G|1771
8XSY|1|S2|C|1772
8XSY|1|S2|C|1773
8XSY|1|S2|C|1774
8XSY|1|S2|U|1775
8XSY|1|S2|G|1776
*
8XSY|1|S2|G|1777
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
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