3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCCCAUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XSZ_005 not in the Motif Atlas
Homologous match to HL_7U2I_104
Geometric discrepancy: 0.1769
The information below is about HL_7U2I_104
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

8XSZ|1|CD|G|30
8XSZ|1|CD|C|31
8XSZ|1|CD|C|32
8XSZ|1|CD|C|33
8XSZ|1|CD|A|34
8XSZ|1|CD|U|35
8XSZ|1|CD|A|36
8XSZ|1|CD|A|37
8XSZ|1|CD|C|38

Current chains

Chain CD
tRNA

Nearby chains

Chain CE
mRNA
Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain S2
Small subunit ribosomal RNA; SSU rRNA
Chain SP
40S ribosomal protein S15
Chain SX
40S ribosomal protein S23

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