HL_8XSZ_053

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8XSZ|1|L5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_053 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0992

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8XSZ|1|L5|U|2810
8XSZ|1|L5|G|2811
8XSZ|1|L5|A|2812
8XSZ|1|L5|A|2813
8XSZ|1|L5|C|2814
8XSZ|1|L5|A|2815
8XSZ|1|L5|G|2816

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19