HL_8XSZ_064

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_064 not in the Motif Atlas

Geometric match to HL_8VM8_002

Geometric discrepancy: 0.3695

The information below is about HL_8VM8_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8XSZ|1|L5|A|4098
8XSZ|1|L5|G|4099
8XSZ|1|L5|C|4100
8XSZ|1|L5|C|4101
8XSZ|1|L5|C|4102
8XSZ|1|L5|C|4103
8XSZ|1|L5|G|4104
8XSZ|1|L5|A|4105
8XSZ|1|L5|G|4106
8XSZ|1|L5|G|4107
8XSZ|1|L5|G|4108
8XSZ|1|L5|G|4109
8XSZ|1|L5|C|4110
8XSZ|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain Lg

60S ribosomal protein L34

Chain SB

40S ribosomal protein S3a