3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUCAGUACG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XSZ_070 not in the Motif Atlas
Homologous match to HL_8C3A_059
Geometric discrepancy: 0.1707
The information below is about HL_8C3A_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34636.1
Basepair signature
cWW-cWW-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

8XSZ|1|L5|U|4301
8XSZ|1|L5|U|4302
8XSZ|1|L5|C|4303
8XSZ|1|L5|A|4304
8XSZ|1|L5|G|4305
8XSZ|1|L5|U|4306
8XSZ|1|L5|A|4307
8XSZ|1|L5|C|4308
8XSZ|1|L5|G|4309

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lo
60S ribosomal protein L36a

Coloring options:


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