HL_8XSZ_083

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_083 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3907

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8XSZ|1|L5|C|5021
8XSZ|1|L5|U|5022
8XSZ|1|L5|C|5023
8XSZ|1|L5|C|5024
8XSZ|1|L5|C|5025
8XSZ|1|L5|U|5026
8XSZ|1|L5|C|5027
8XSZ|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L22

Chain SI

40S ribosomal protein S8