HL_8XSZ_093

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XSZ_093 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1759

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8XSZ|1|S2|C|195
8XSZ|1|S2|C|196
8XSZ|1|S2|U|197
8XSZ|1|S2|U|198
8XSZ|1|S2|C|199
8XSZ|1|S2|G|200
8XSZ|1|S2|C|201
8XSZ|1|S2|G|202
8XSZ|1|S2|G|203
8XSZ|1|S2|G|204

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8