3D structure

PDB id
8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCGGGGUGCCCUGGCGGCCCUG*G
Length
23 nucleotides
Bulged bases
8XSZ|1|S2|C|1774, 8XSZ|1|S2|C|1769, 8XSZ|1|S2|G|1770, 8XSZ|1|S2|C|1774
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XSZ_123 not in the Motif Atlas
Geometric match to HL_8C3A_022
Geometric discrepancy: 0.204
The information below is about HL_8C3A_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

8XSZ|1|S2|C|1755
8XSZ|1|S2|C|1756
8XSZ|1|S2|G|1757
8XSZ|1|S2|G|1758
8XSZ|1|S2|G|1759
8XSZ|1|S2|G|1760
8XSZ|1|S2|U|1761
8XSZ|1|S2|G|1771
8XSZ|1|S2|C|1772
8XSZ|1|S2|C|1773
8XSZ|1|S2|C|1774
8XSZ|1|S2|U|1775
8XSZ|1|S2|G|1776
8XSZ|1|S2|G|1777
8XSZ|1|S2|C|1769
8XSZ|1|S2|G|1770
8XSZ|1|S2|G|1771
8XSZ|1|S2|C|1772
8XSZ|1|S2|C|1773
8XSZ|1|S2|C|1774
8XSZ|1|S2|U|1775
8XSZ|1|S2|G|1776
*
8XSZ|1|S2|G|1777

Current chains

Chain S2
18S rRNA

Nearby chains

Chain LW
60S ribosomal protein L24
Chain SG
40S ribosomal protein S6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5096 s