HL_8XT0_015

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

8XT0|1|L1|A|511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_015 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1895

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8XT0|1|L1|C|505
8XT0|1|L1|C|506
8XT0|1|L1|U|507
8XT0|1|L1|A|508
8XT0|1|L1|A|509
8XT0|1|L1|A|510
8XT0|1|L1|A|511
8XT0|1|L1|G|512
8XT0|1|L1|C|513
8XT0|1|L1|A|514
8XT0|1|L1|G|515

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L4

Large ribosomal subunit protein mL54

Chain LK

Large ribosomal subunit protein uL11m

Chain LP

Large ribosomal subunit protein uL16m