HL_8XT0_022

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

8XT0|1|L1|A|830, 8XT0|1|L1|C|831, 8XT0|1|L1|C|832, 8XT0|1|L1|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_022 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.092

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8XT0|1|L1|U|827
8XT0|1|L1|U|828
8XT0|1|L1|U|829
8XT0|1|L1|A|830
8XT0|1|L1|C|831
8XT0|1|L1|C|832
8XT0|1|L1|A|833
8XT0|1|L1|A|834
8XT0|1|L1|A|835
8XT0|1|L1|A|836
8XT0|1|L1|A|837

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m