HL_8XT0_025

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUACCCUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT0_025 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.3564

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8XT0|1|L1|G|904
8XT0|1|L1|U|905
8XT0|1|L1|A|906
8XT0|1|L1|C|907
8XT0|1|L1|C|908
8XT0|1|L1|C|909
8XT0|1|L1|U|910
8XT0|1|L1|A|911
8XT0|1|L1|A|912
8XT0|1|L1|C|913

Current chains

Chain L1

16s rRNA

Nearby chains

Chain S1

Small subunit ribosomal RNA; SSU rRNA